Fabio Cecconi's papers
Publications

Fabio Cecconi
GScholar: T bMdUoAAAAJ

ResearcherID: B-3777-2009

Orcid: 0000-0001-8351-248X

Scopus: 7005947094

89.   D. Lucente, M. Baldovin, F. Cecconi, M. Cencini, N. Cocciaglia, A. Puglisi, M. Viale, A. Vulpiani
Conceptual and practical approaches for investigating irreversible processes. (pdf)
arXiv:2410.15925

88.   M. Baldelli, G. Di Muccio, F. Viola, A. Giacomello, F. Cecconi, S. Balme, M. Chinappi,
Performance of Single Nanopore and Multi-Pore Membranes for Blue Energy. (pdf)
Chem.Phys.Chem in press 2024.

87.   F. Cecconi, A. Puglisi, M. Viale, D. Lucente,
Response of Worm-like Chains to Traveling-Wave Active Forces (pdf)
Soft Matter submitted 2024.

86.   F. Cecconi, G. Costantini, C. Guardiani, M. Baldovin, A. Vulpiani,
Correlation, Response and Entropy approaches to allosteric behaviours: A critical comparison on the ubiquitin case. (pdf)
Phys. Biol. 20 056002 (2023).

85.   R. Zando, M. Chinappi, C. Giordani, F. Cecconi, Z. Zhang,
Surface-particle interactions control the escape time of a particle from a nanopore-gated nanocavity system:
a coarse-grained simulation. (pdf)
Nanoscale, 15, 11107-11114, (2023).

84.   F. Cecconi, A. Taloni,
Universal and Non-Universal Features in the Random Shear Model. (pdf)
Entropy, 24, 1350 (2022).

83.   S. Zeng, M. Chinappi, F. Cecconi, T. Odijk, Z. Zhang,
DNA compaction and dynamic observation in a nanopore gated sub-attoliter silicon nanocavity. (pdf)
Nanoscale, 14, 12038-12047 (2022).

82.   C. Guardiani, F. Cecconi, L. Chiodo, G. Cottone, P. Malgaretti, L. Maragliano, M.L. Barabash,
        G. Camisasca, M. Ceccarelli, B. Corry, R. Roth, A. Giacomello, B. Roux,
Computational methods and theory for ion channel research. (pdf)
Adv. Phys.: X 7, 2080587 (2022).

81.   M. Baldovin, F. Cecconi, A. Provenzale, A. Vulpiani,
Extracting causation from millennial-scale climate fluctuations in the last 800 kyr. (pdf)
Sci. Rep. 12, 15320, (2022).

80.   F. Cecconi, G. Costantini, A. Taloni, A. Vulpiani,
Probability distribution functions of sub- and super-diffusive systems. (pdf)
Phys. Rev. R, 4, 023192 (2022).

79.   L. Caprini, F. Cecconi, U. Marini Bettolo Marconi,
Correlated escape of active particles across a potential barrier. (pdf)
J. Chem. Phys. 155, 234705 (2021).

78.   L. Caprini, F. Cecconi, C. Maggi, U. Marini Bettolo Marconi,
Activity-controlled clogging and unclogging of microchannels (pdf)
Phys. Rev. R, 2, 043359 (2020).

77.   M. Chinappi, M. Yamaji, R. Kawano, F. Cecconi,
Analytical model for particle capture in nanopores elucidates competition among electrophoresis, electroosmosis and dielectrophoresis. (pdf)
ACS Nano, 14, 15816-15828 (2020).

76.   M. Baldovin, F. Cecconi, A. Vulpiani,
Understanding causation via correlations and linear response theory. (pdf)
Phys. Rev. R, 2, 043436 (2020).

75.   L. Caprini, F. Cecconi, A. Puglisi, A. Sarracino,
Diffusion properties of self-propelled particles in cellular flows. (pdf)
Soft Matter, 16, 5431-5438 (2020).

74.   L. Natali, L. Caprini, F. Cecconi,
How a local active force modifies the structural properties of polymers. (pdf)
Soft Matter, 16, 2594-2604 (2020).

73.   F. Cecconi, M. Chinappi,
Native-state fingerprint on the ubiquitin translocation across a nanopore. (pdf)
Phys. Rev. E, 101, 032401 (2020).

72.   M. Baldovin, F. Cecconi, A. Vulpiani,
Effective equations for reaction coordinates in polymer transport. (pdf)
J. Stat. Mech.: Theory Exp. P013208 (2020).

71.   L. Caprini, F. Cecconi, U. Marini Bettolo Marconi,
Transport of active particles in an open-wedge channel. (pdf)
J. Chem. Phys. 150, 144903 (2019).

70.   C.-Yi Gao, F. Cecconi, A. Vulpiani, H. Zhou, E. Aurell,
DCA for genome-wide epistasis analysis: the statistical genetics perspective. (pdf)
Phys. Biol. 16, 026002 (2019).

69.   M. Chinappi, E.L. Bonome, F. Cecconi,
Translocation intermediates of Ubiquitin through alpha-Hemolysin nanopore: implications for detection of post-translational modifications. (pdf)
Nanoscale 11, 9920-9930 (2019).

68.   F. Cecconi, V. Blakaj, G. Gradoni, A. Vulpiani,
Diffusive transport in highly corrugated channels. (pdf)
Phys. Lett. A, 383, 1084-1091 (2018).

67.   M. Baldovin, F. Cecconi, M. Cencini, A. Puglisi, A. Vulpiani,
The Role of Data in Model Building and Prediction: A Survey Through Examples. (pdf)
Entropy, 20, 807 (2018).

66.   F. Cecconi, A. Puglisi, A. Sarracino, A. Vulpiani,
Anomalous transport properties of a driven active particle in a steady laminar flow. (pdf)
J. Phys.: Condens. Matter, 30, 264002 (2018).

65.   M. Chinappi, F. Cecconi,
Protein sequencing via nanopore based devices: a nanofluidics perspective. (pdf)
J. Phys.: Condens. Matter, 30, 204002 (2018).

64.   F. Cecconi, A. Sarracino, A. Puglisi, A. Vulpiani,
Anomalous force-velocity relation of driven inertial tracers in steady laminar flows. (pdf)
Eur. Phys. J. E, 40, 81 (2017).

63.   F. Cecconi, M.A. Shahzad, U. Marini Bettolo Marconi, A. Vulpiani,
Frequency-control of protein translocation across an oscillating nanopore. (pdf)
Phys. Chem. Chem. Phys. 19, 11260-72 (2017).

62.   E.L. Bonome, F. Cecconi, M. Chinappi,
Electroosmotic flow through an α-Hemolysin nanopore. (pdf)
Microfluid Nanofluid 21:96 (2017).

61.   A Sarracino, F Cecconi, A Puglisi, A Vulpiani,
Nonlinear response of inertial tracers in steady laminar flows:
differential and absolute negative mobility. (pdf)
Phys. Rev. Lett. 117, 174501 (2016).

60.   F. Cecconi, D. Vergni, A. Vulpiani,
Reaction Spreading in Systems With Anomalous Diffusion. (pdf)
Math. Model. Nat. Phenom. 11, 107-127 (2016).

59.   L. Cerino, F. Cecconi, M. Cencini, A. Vulpiani,
The role of the number of degrees of freedom and chaos in macroscopic irreversibility. (pdf)
Physica A 442, 486-497 (2016).

58.   P. Ansalone, M. Chinappi, L. Rondoni, F. Cecconi,
Driven diffusion against electrostatic or effective energy barrier across α-Hemolysin. (pdf)
J. Chem. Phys. 143, 154109 (2015).

57.   M. Chinappi, T. Luchian, F. Cecconi,
Nanopore tweezers: voltage controlled trapping and releasing of analytes. (pdf)
Phys. Rev. E 92, 032714 (2015).

56.   C.A. Plata, F. Cecconi, M. Chinappi, A. Prados,
Understanding the dependence on the pulling speed
of the unfolding pathway of proteins. (pdf)
J. Stat. Mech. P08003 (2015).

55.   E.L. Bonome, R. Lepore, D. Raimondo, F. Cecconi, A. Tramontano, M. Chinappi,
Multistep Current Signal in Protein Translocation through Graphene Nanopores. (pdf)
J. Phys. Chem. B, 119, 5815-5823 (2015).

54.   G. Forte, F. Cecconi, A. Vulpiani,
Transport and Fluctuating Dissipation Relations in asymptotic
and pre-asymptotic diffusion across channels with variable section. (pdf)
Phys. Rev. E 90, 062110 (2014).

53.   M. Chinappi, C.M. Casciola, F. Cecconi, U. Marini Bettolo Marconi, S. Melchionna,
Modulation of current through a nanopore induced by a charged globule:
implications for DNA-docking. (pdf)
Europhys. Lett. 108 46002-(6) (2014).

52.   C. Guardiani, D. Di Marino, A. Tramontano, M. Chinappi, F. Cecconi,
Exploring the unfolding pathway of MBP: an integrated computational approach. (pdf)
J. Chem. Theory Comput. 10, 3589-97 (2014).

51.   G. Forte, F. Cecconi and A. Vulpiani,
Non-anomalous diffusion is not always Gaussian. (pdf)
Eur. Phys. J. B 87, 102 (2014).

50.   C. Guardiani, M. Cencini, F. Cecconi,
Coarse-grained modeling of protein unspecifically bound to DNA. (pdf)
Phys. Bio. 11, 026003 (2014).

49.   F. Cecconi, M. Bacci, M. Chinappi,
Protein transport across nanopores: a statistical mechanical perspective
from coarse-grained modeling and approaches. (pdf)
Prot. Pept. Lett. 21, 227-234 (2014).

48.   G. Forte, R. Burioni, F. Cecconi, A. Vulpiani,
Anomalous diffusion and response in branched systems: a simple analysis. (pdf)
J. Phys.: Condens. Matter 25, 465106 (2013).

47.   M. Bacci, M. Chinappi, C.M. Casciola, F. Cecconi,
Protein translocation in narrow pores: inferring bottlenecks from native structure topology. (pdf)
Phys. Rev. E 88, 022712 (2013).

46.   M. Bacci, M. Chinappi, C.M. Casciola, F. Cecconi,
Role of denaturation in Maltose Binding Protein translocation dynamics. (pdf)
J. Phys. Chem. B. 116, 4255-4262 (2012)

45.   F. Cecconi, M. Cencini, M. Falcioni, A. Vulpiani,
The Prediction of Future from the past: an old problem from a modern perspective.(pdf)
Am. J. Phys. 80, 1001-1008 (2012)

44.   F. Cecconi, G. Costantini, U. Marini-Bettolo-Marconi,
Thermally induced directed currents in hard rod systems. (pdf)
Granular Matter14, 111-114 (2012).

43.   M. Chinappi, F. Cecconi, C.M. Casciola,
Computational analysis of Maltose Binding Protein translocation. (pdf)
Philos. Mag. 91, 2034-2048 (2011)

42.   C. Guardiani, R. Livi, F. Cecconi,
Coarse grained modeling and approaches to protein folding (pdf)
Curr. Bio-Informatics, 5, 217 (2010)

41.   F. Cecconi, U. Marini-Bettolo-Marconi and A. Vulpiani,
Translocation process of structured polypeptides across nanopores (pdf)
Spectroscopy - Biomed. Appl. 24, 421-426 (2010)

40.   A. Ammenti, F. Cecconi, U. Marini-Bettolo-Marconi and A. Vulpiani,
A statistical model for translocation of structured polypeptide chains through nanopores (pdf)
J. Phys. Chem. B 113, 10348 (2009)

39.   F. Piazza, P. De-Los-Rios and F. Cecconi,
Temperature dependence of normal mode reconstructions of protein dynamics (pdf)
Phys. Rev. Lett. 102, 218104 (2009).

38.   U. Marini-Bettolo-Marconi, P. Tarazona, F. Cecconi and S. Melchionna,
Beyond Dynamic Density Functional theory: the role of inertia (pdf)
J. Phys.: Condens. Matter 20, 494233 (2008).

37.   F. De Lillo, F. Cecconi, G. Lacorata and A. Vulpiani,
Sedimentation speed on inertial particles in laminar and turbulent flows (pdf)
Europhys. Lett. 84, 40005 (2008).

36.   A. Gabrielli and F. Cecconi,
Clustering and coalescence from multiplicative noise: the Kraichnan ensemble (pdf)
J. Phys. A: Math. Gen. 41, 235003 (2008).

35.   F. Cecconi, C. Guardiani and R. Livi,
Analyzing pathogenic mutations of C5 domain from cardiac Myosin Binding Protein C through MD simulations.(pdf)
Eur. Biophys. J. 37, 683 (2008).

34.   C. Guardiani, F. Cecconi and R. Livi,
Stability and kinetic properties of C5-domain from Myosin Binding Protein C and its mutants (pdf)
Biophys. J. 94, 1403 (2008).

33.   C. Guardiani, F. Cecconi and R. Livi,
Computational analysis of folding and mutation properties of C5 domain from Myosin Binding Protein C (pdf)
Proteins: Struct. Func. Bioinf. 70, 1313 (2008).

32.   F. Cecconi, M. Cencini and A. Vulpiani,
Transport properties in chaotic and non-chaotic many particle systems (pdf)
J. Stat. Mech., P12001 (2007).

31.   A. Gabrielli, F. Cecconi,
Diffusion, super-diffusion and coalescence from single step (pdf)
J. Stat. Mech. P10007 (2007).

30.   F. Cecconi, F. Piazza and P. De-Los-Rios,
Diffusion-limited unbinding of small peptides from PDZ domains (pdf)
J. Phys. Chem. B 111, 11057 (2007).

29.   U. Marini-Bettolo-Marconi, F. Cecconi and P. Tarazona,
Theory of thermostatted inhomogeneous granular fluids:
A self-consistent density functional description (pdf)
J. Chem. Phys. 126, 164904 (2007).

28.   F. Cecconi, G. Gonnella and G.P. Saracco,
Kinetics of self-induced aggregation in Brownian particles (pdf)
Phys. Rev. E 75, 031111 (2007).

27.   G. Costantini, F. Cecconi and U. Marini-Bettolo-Marconi,
Transport of a heated granular gas in a washboard potential (pdf)
J. Chem. Phys. 125, 204711 (2006).

26.   C. Guardiani, F. Cecconi and R. Livi,
Identification of kinetic bottlenecks of hPin1 WW domain through MD simulations
using simplified protein models
WSEAS Trans. on Biology and Biomedicine 3, 249-256 (2006).

25.   F. Cecconi, C. Guardiani and R. Livi,
Testing simplified protein models of the hPin1 WW domain (pdf)
Biophys. J. 91, 694-704 (2006).

24.   U. Marini-Bettolo-Marconi, G. Costantini, M. Natali and F. Cecconi,
Inelastic Takahashi hard-rod gas (pdf)
J. Chem. Phys. 124, 044507 (2006).

23.   A. Puglisi, F. Cecconi and A. Vulpiani,
Models of fluidized granular materials: examples of non equilibrium steady states (pdf)
J. Phys.: Condens. Matter 17 S2715, 1-16 (2005).

22.   P. De-Los-Rios, F. Cecconi, A. Grignoli-Pretre, G. Dietler, O. Michielin, F. Piazza and B. Juanico,
Functional Dynamics of PDZ Binding Domains: A Normal-Mode Analysis (pdf)
Biophys. J. 89, 14 (2005).

21.   P. Bruscolini, F. Cecconi,
Analysis of PIN1 WW-domain through a simple statistical mechanics model of protein (pdf)
Biophys. Chem. 115, 153 (2005).

20.   F. Cecconi, M. Cencini, M. Falcioni, A. Vulpiani,
Brownian motion and diffusion: from stochastic processes to deterministic chaos (pdf)
Chaos 15, 026102 (2005).

19.   F. Cecconi, U. Marini-Bettolo-Marconi, A. Puglisi, F. Diotallevi,
Inelastic hard-rods in a periodic potential (pdf)
J. Chem. Phys. 121, 5125 (2004).

18.   R. Burioni, D. Cassi, F. Cecconi, A. Vulpiani,
Topological Thermal Instability and Length of Proteins (pdf)
Proteins: Struct. Funct. Bioinf. 55, 529 (2004).

17.   F. Bouchet, F. Cecconi, A. Vulpiani,
Minimal stochastic model for the Fermi's acceleration (pdf)
Phys. Rev. Lett. 92, 040601 (2004).

16.   F. Cecconi, F. Diotallevi, U. Marini-Bettolo-Marconi and A. Puglisi,
Fluid-like behavior of a one-dimensional granular gas (pdf)
J. Chem. Phys. 120, 35 (2004).

15.   F. Bagnoli, F. Cecconi, A. Flammini and A. Vespignani,
Short period attractors and non-ergodic behavior in the deterministic fixed energy sandpile models (pdf)
Europhys. Letters 63, 512 (2003).

14.   F. Cecconi, M. Falcioni and A. Vulpiani,
Complexity characterization of dynamical systems through predictability (pdf)
Acta Phys. Pol. B 34, 3581 (2003).

13.   F. Cecconi, D. del-Castillo-Negrete, M. Falcioni and A. Vulpiani,
The origin of diffusion: the case of non chaotic systems (pdf)
Physica D 180, 129 (2003).

12.   F. Cecconi, A. Puglisi, U. Marini-Bettolo-Marconi and A. Vulpiani,
Noise-Activated Granular Dynamics (pdf)
Phys. Rev. Lett. 90, 064301 (2003).

11.   P. Bruscolini and F. Cecconi,
Mean-Field approach for a statistical mechanical model of proteins (pdf)
J. Chem. Phys. 119, 1248 (2003).

10.   F. Cecconi, M. Marsili, J.R. Banavar and A. Maritan,
Diffusion, Peer Pressure and Tailed Distributions (pdf)
Phys. Rev. Lett. 89, 088102 (2002).

9.   C. Micheletti, F. Cecconi, A. Flammini and A. Maritan,
Crucial Stages of Protein Folding Through a Solvable Model: Predicting Target Sites for Enzyme Inhibiting Drugs (pdf)
Protein Science 11, 1878 (2002).

8.   F. Cecconi, C. Micheletti, P. Carloni and A. Maritan,
Molecular Dynamics Studies on HIV-1 Protease: Drug Resistance and Folding Pathways (pdf)
Proteins: Struc. Funct. Gen. 43, 365 (2001).

7.   F. Bagnoli and F. Cecconi,
Synchronization in non-chaotic dynamical systems (pdf)
Phys. Lett. A. 282, 9 (2001).

6.   F. Cecconi, J.R. Banavar and A. Maritan,
Scaling behaviour in a non-local and nonlinear diffusion equation (pdf)
Phys. Rev. E 62, R5879 (2000).

5.   F. Cecconi and A. Politi,
An analytical estimate of the maximum Lyapunov exponent in products of tridiagonal random matrices (pdf)
J. Phys. A: Math. Gen. 32, 7603 (1999).

4.   F. Cecconi, R. Livi and A. Politi,
Fuzzy transition region in a 1D coupled-stable-map lattice (pdf)
Phys. Rev. E, 57, 2703 (1998).

3.   F. Cecconi and A. Politi,
N-tree approximation for the largest Lyapunov exponent in a coupled map lattice (pdf)
Phys. Rev. E 56, 4998 (1997).

2.   F. Cecconi, A. Crisanti, M. Falcioni and A. Vulpiani,
Sporadicity and synchronization in one-dimensional asymmetrically coupled maps(pdf)
J. Phys. A: Math. Gen. 28, 4727 (1995)

1.   F. Cecconi and A. Vulpiani,
Approximation of chaotic systems in terms of Markovian processes (pdf)
Phys. Lett. A, 201, 326 (1995).



The above articles are Copyright by the respective publishers, and may be downloaded for personal use only. Any other use requires prior permission of the author and the respective publisher.


Books and Monographs

  • M. Cencini F. Cecconi and A. Vulpiani:
    Chaos: From Simple Models to Complex Systems.
    Series on Advances in Statistical Mechanics - Vol.17
    World Scientific ISBN: 978-981-4277-65-5

  • F. Cecconi, M. Cencini, A. Puglisi, D. Vergni and A. Vulpiani,
    Large Deviations in Physics.
    Lecture Notes in Physics Vol.885 (Springer-Verlag 2014)


    • Proceedings and Book-Chapters

  • M. Chinappi, G. Di Muccio, C. Giordani, F. Cecconi, B. M. della Rocca:
    A Brownian computational approach for supporting the design of nanopore-based biosensors.
    doi: 10.1109/MetroInd4.0IoT54413.2022.9831727, pp. 98-103.
    2022-IEEE Int. Workshop on Metrology for Industry 4.0 & IoT (MetroInd4.0&IoT),
    Trento, Italy, 2022.

  • M. Chinappi, E.L. Bonome, T. Luchian and F. Cecconi:
    Protein Translocation through Nanopores: Insights from Computational and Theoretical approaches. (pdf)
    Biophys. & Bioeng. Letters 8, 6-9 (2015).
    Proc. Biophysics@Rome 2015, Rome 28-29 of May (2015).

  • F. Cecconi, M. Cencini, A. Puglisi, D. Vergni and A. Vulpiani,
    From the Law of Large Numbers to Large Deviation Theory in Statistical Physics: An Introduction
    Large Deviations in Physics
    Lect. Notes Phys. 885, 1-17 (2015). (Springer-Verlag 2014)
    Eds. A. Vulpiani et al.

  • M. Chinappi, S. Melchionna, F. Cecconi, U. Marini Bettolo Marconi, C.M. Casciola,
    Mass and charge flow in nanopores: numerical simulation
    via mesoscale models     (pdf)
    Proc. XXI Congress "Associazione Italiana Meccanica Teorica e Applicata" (AIMETA)
    Politecnico di Torino (Italy) Sept. 17-20 2013

  • F. Cecconi, M. Cencini, F. Sylos Labini,
    Si puo` prevedere il futuro?
    Le Scienze n.538, 3 June 2013.

  • C. Guardiani and F. Cecconi,
    Coarse-Grained protein modeling
    Protein Folding Ed. E.C. Walters
    Nova Publishers, pp 531-578, 2011.
    ISBN: 978-1-61728-990-3

  • M. Cencini, F. Cecconi, A. Falcioni and A. Vulpiani,
    The role of chaos for the validity of statistical mechanics (pdf)
    The Fermi-Pasta-Ulam Problem
    Lecture Notes in Physics, Vol. 728 p.123 (Springer 2008)
    Ed. G. Gallavotti

  • F. Cecconi, C. Guardiani, R. Livi,
    Computational characterization of the mutation impact on domain C5 of Myosin Binding Protein C
    Proc. SPIE, 6602, 660209 (2007).

  • F. Cecconi, C. Guardiani, R. Livi,
    A molecular dynamics investigation of the kinetic bottlenecks of the hPin1 WW domain I:
    simulations with the Sorenson/Head-Gordon model     (pdf)
    Proc. of the 2006 WSEAS Int. Conf. on Mathematical Biology and Ecology
    Miami (USA) 2006. Eds: C.A. Long et al.

  • F. Cecconi, C. Guardiani, R. Livi,
    A molecular dynamics investigation of the kinetic bottlenecks of the hPin1 WW domain II:
    simulations with the Go-model     (pdf)
    Proc. of the 2006 WSEAS Int. Conf. on Mathematical Biology and Ecology
    Miami (USA) 2006. Eds: C.A. Long et al.

  • U. Marini-Bettolo-Marconi, F. Cecconi, and A. Puglisi,
    Simple models for compartmentalized sand
    Traffic and Granular Flow 2003, (Springer 2005)
    Eds. P.H.L. Bovy, S.P. Hoogendoorn, M. Schreckenberg, D.E. Wolf.

  • F. Cecconi, R. Burioni, D. Cassi and A. Vulpiani,
    "Influence of thermal instability on protein sizes" Proceedings of the
    "1st Int. Conf. on Complex Systems, Intelligence and Modern Technology Applications" (CSIMTA)
    19-22 Sept.2004, Cherbourg (France).

  • F. Bagnoli, F.A. Bignone, F. Cecconi and A. Politi,
    Information, Complexite' et Biologie
    L'Heritage de Kolmogorov en Physique (Editions Belin 2003)
    Eds. A.Vulpiani and R.Livi

  • F. Bagnoli, F.A. Bignone, F. Cecconi and A. Politi,
    Information, Complexity and Biology (pdf)
    Kolmogorov's Legacy in Physics,
    Lecture Notes in Physics, Vol. 636 (Springer 2003).
    Eds. A. Vulpiani and R. Livi,

    • Updated May 10ht 2011